Atlassian Jira Data Center MCP

This package provides a Machine Comprehension Protocol (MCP) server for interacting with Atlassian Jira Data Center edition.

Interactive Setup

The easiest way to configure this server is the built-in setup subcommand:

npx @atlassian-dc-mcp/jira setup

It prompts for host, API base path, default page size, and API token, then stores them in the most secure place available:

• macOS — token in the login Keychain (service atlassian-dc-mcp, account jira-token); host / base path / page size in ~/.atlassian-dc-mcp/jira.env (mode 0600).
• Linux — everything in ~/.atlassian-dc-mcp/jira.env with POSIX mode 0600 (read/write for your user only).
• Windows — everything in %USERPROFILE%\.atlassian-dc-mcp\jira.env. Node passes the mode bits but Windows ignores them, so the file inherits the ACL of your user profile directory (typically readable only by your user, SYSTEM, and Administrators).

After setup, you can launch the server without any environment variables:

{
  "mcpServers": {
    "atlassian-jira-dc": {
      "command": "npx",
      "args": ["-y", "@atlassian-dc-mcp/jira"]
    }
  }
}

Environment variables still override stored values — see Configuration sources below.

Scripted / non-interactive setup

For CI, remote sessions, or shell scripts, pass values as flags and add --non-interactive to skip prompts:

npx @atlassian-dc-mcp/jira setup --non-interactive \
  --host jira.example.com \
  --token "$JIRA_TOKEN"

Available flags: --host/-H, --api-base-path/-b, --token/-t, --default-page-size/-s, --non-interactive/-n, --help/-h. In --non-interactive mode, missing values fall back to existing configuration and the run exits non-zero if a host (or full-URL --api-base-path) and token cannot be resolved. An existing token is reused when --token is omitted. Run npx @atlassian-dc-mcp/jira setup --help for full usage.

Claude Desktop Configuration

To use this MCP connector with Claude Desktop, add the following to your Claude Desktop configuration:

macOS:

~/Library/Application Support/Claude/claude_desktop_config.json

Windows:

%APPDATA%\Claude\claude_desktop_config.json

{
  "mcpServers": {
    "atlassian-jira-dc": {
      "command": "npx",
      "args": ["-y", "@atlassian-dc-mcp/jira"],
      "env": {
        "JIRA_HOST": "your-jira-host",
        "JIRA_API_TOKEN": "your-token"
      }
    }
  }
}

To reuse one shared dotenv file across multiple tools or MCP hosts, point the server at an absolute file path:

{
  "mcpServers": {
    "atlassian-jira-dc": {
      "command": "npx",
      "args": ["-y", "@atlassian-dc-mcp/jira"],
      "env": {
        "ATLASSIAN_DC_MCP_CONFIG_FILE": "/Users/your-user/.config/atlassian-dc-mcp.env"
      }
    }
  }
}

Windows example:

{
  "mcpServers": {
    "atlassian-jira-dc": {
      "command": "npx",
      "args": ["-y", "@atlassian-dc-mcp/jira"],
      "env": {
        "ATLASSIAN_DC_MCP_CONFIG_FILE": "C:\\\\Users\\\\your-user\\\\AppData\\\\Roaming\\\\atlassian-dc-mcp.env"
      }
    }
  }
}

Note: Set JIRA_HOST variable only to domain + port without a protocol (e.g., your-instance.atlassian.net). The https protocol is assumed.

Alternatively, you can use JIRA_API_BASE_PATH instead of JIRA_HOST to specify the complete API base URL including protocol (e.g., https://your-instance.atlassian.net/rest). Note that the /api/2/search/ part is static and added automatically in the code, so you don't need to include it in the JIRA_API_BASE_PATH value.

Features

• Search for issues using JQL (Jira Query Language)
• Get issue details by key
• Get issue comments
• Create and update issues
• Add and update comments on issues
• Link and unlink issues
• Watch and unwatch issues

Setup

1. Install dependencies:

   npm install

2. Create a .env file in the packages/jira directory, or put the same values in a shared dotenv file and set ATLASSIAN_DC_MCP_CONFIG_FILE to its absolute path:

   JIRA_HOST=your-jira-instance.atlassian.net
   # OR alternatively use
   # JIRA_API_BASE_PATH=https://your-jira-instance.atlassian.net/rest
   # Note: /api/latest/ is added automatically, do not include it
   JIRA_API_TOKEN=your-personal-access-token
   
   # Optional: default page size for paginated read tools (fallback: 25)
   JIRA_DEFAULT_PAGE_SIZE=25

   See Configuration sources for the full precedence chain.

   Attachment filesystem access (opt-in)

   By default this server is an API-only client: the attachment tools never read from or write to the local filesystem, and jira_uploadAttachment is not even registered. jira_downloadAttachment is always available but can only return file bytes inline (base64/text) — it cannot touch local disk.

   Local filesystem access is opt-in and confined to operator-configured directories that the model cannot choose:

   # Enable each direction separately (default: false)
   JIRA_ATTACHMENTS_UPLOAD_ENABLED=true
   JIRA_ATTACHMENTS_DOWNLOAD_ENABLED=true
   
   # Allowed roots (os path-separator list). Uploads may only read from these,
   # downloads may only write into the first configured download root.
   JIRA_ATTACHMENTS_UPLOAD_ROOTS=/srv/jira-exchange/in
   JIRA_ATTACHMENTS_DOWNLOAD_ROOTS=/srv/jira-exchange/out
   
   # Convenience: a single dedicated exchange directory used as both roots
   JIRA_ATTACHMENTS_DIR=/srv/jira-exchange
   
   # Hard per-file size limits in bytes (default: 25 MiB)
   JIRA_ATTACHMENTS_MAX_UPLOAD_BYTES=26214400
   JIRA_ATTACHMENTS_MAX_DOWNLOAD_BYTES=26214400

   Guardrails applied when enabled:

   • A direction only activates when its flag is set and at least one root resolves; otherwise the tool stays disabled and a warning is logged.
   • Roots are canonicalized (realpath) at startup. Requested paths are relative to a root; absolute paths and .. segments are rejected, and a path that escapes a root through a symlinked directory is refused.
   • Uploads reject symlinks and non-regular files (FIFOs, devices, directories).
   • Downloads never overwrite an existing file (including a symlink) — they use an exclusive write.
   • Both directions enforce the configured hard size limit.

   To create a personal access token:

• In Jira, select your profile picture at the top right
• Select Personal Access Tokens
• Select Create token and give it a name
• Copy the token and store it securely (you won't be able to see it again)

Configuration sources

Each key is resolved by walking these sources in priority order and taking the first non-empty value:

| Priority | Source | Reads | Written by setup | |---------:|--------|-------|--------------------| | 100 | process.env (JIRA_HOST, JIRA_API_BASE_PATH, JIRA_API_TOKEN, JIRA_DEFAULT_PAGE_SIZE) | all keys | — | | 80 | env file — ATLASSIAN_DC_MCP_CONFIG_FILE (absolute path) or ./.env | all keys | — | | 60 | home file — ~/.atlassian-dc-mcp/jira.env on macOS/Linux, %USERPROFILE%\.atlassian-dc-mcp\jira.env on Windows (mode 0600 on POSIX; Windows inherits the user-profile ACL) | all keys | host, apiBasePath, defaultPageSize (always); token (non-darwin or keychain fallback) | | 40 | macOS Keychain — service atlassian-dc-mcp, account jira-token | token only | token (darwin only) |

setup always writes non-secret fields to the home file and tries the keychain first for the token. If a higher-priority source shadows the value being saved, setup prints a warning so you can unset the env var.

Usage

Start the MCP server:

npm run build

Or for development with auto-reload:

npm run dev

Available Tools

1. jira_searchIssues

Search for JIRA issues using JQL in the JIRA Data Center edition instance.

Parameters:

• jql (string, required): JIRA Query Language search string
• expand (array, optional): Additional response sections to expand, such as renderedFields, names, or schema
• startAt (number, optional): Starting index for pagination
• maxResults (number, optional): Maximum number of results to return. Defaults to JIRA_DEFAULT_PAGE_SIZE or 25.
• fields (array, optional): Issue field names to return. When omitted, the tool uses a moderate-detail default field set.

2. jira_getIssue

Get details of a JIRA issue by its key from the JIRA Data Center edition instance.

Parameters:

• issueKey (string, required): The issue key (e.g., "PROJECT-123")
• expand (string, optional): Comma-separated response sections to expand, such as renderedFields, changelog, or transitions
• fields (array, optional): Issue field names to return. When omitted, the tool uses the search default field set plus parent and subtasks.

3. jira_getIssueComments

Get comments for a JIRA issue from the JIRA Data Center edition instance.

Parameters:

• issueKey (string, required): The issue key (e.g., "PROJECT-123")
• expand (string, optional): Comma-separated comment expansions, such as renderedBody
• maxResults (number, optional): Maximum number of comments to return. Defaults to JIRA_DEFAULT_PAGE_SIZE or 25.
• startAt (number, optional): Starting comment offset for pagination

4. jira_createIssue

Create a new issue in the JIRA Data Center edition instance.

Parameters:

• projectId (string, required): Project key (despite the parameter name, e.g., "PROJ")
• summary (string, required): Issue summary
• description (string, required): Issue description in format suitable for JIRA Data Center edition (JIRA Wiki Markup)
• issueTypeId (string, required): ID of the issue type
• customFields (object, optional): Additional JIRA fields merged into the issue payload. Can be used for custom fields and standard fields such as labels. Example: {"labels":["urgent","bug"],"customfield_10001":"Custom Value"}

5. jira_updateIssue

Update an existing issue in the JIRA Data Center edition instance.

Parameters:

• issueKey (string, required): The issue key (e.g., "PROJECT-123")
• summary (string, optional): New issue summary
• description (string, optional): New issue description in format suitable for JIRA Data Center edition (JIRA Wiki Markup)
• issueTypeId (string, optional): New issue type ID
• customFields (object, optional): Additional JIRA fields merged into the update payload. Can be used for custom fields and standard fields such as labels. Example: {"labels":["urgent","bug"],"customfield_10001":"Custom Value"}

6. jira_postIssueComment

Add a comment to a JIRA issue in the JIRA Data Center edition instance.

Parameters:

• issueKey (string, required): The issue key (e.g., "PROJECT-123")
• comment (string, required): Comment text in format suitable for JIRA Data Center edition (JIRA Wiki Markup)

7. jira_updateIssueComment

Update the body of an existing comment on a JIRA issue in the JIRA Data Center edition instance. Use jira_getIssueComments to find the comment id.

Parameters:

• issueKey (string, required): The issue key (e.g., "PROJECT-123")
• commentId (string, required): The id of the comment to update (found via jira_getIssueComments)
• comment (string, required): New comment text that replaces the existing body, in format suitable for JIRA Data Center edition (JIRA Wiki Markup)

8. jira_getTransitions

Get the available workflow transitions for a JIRA issue in the JIRA Data Center edition instance.

Parameters:

• issueKey (string, required): The issue key (e.g., "PROJECT-123")

9. jira_transitionIssue

Transition a JIRA issue to a new status in the JIRA Data Center edition instance.

Parameters:

• issueKey (string, required): The issue key (e.g., "PROJECT-123")
• transitionId (string, required): Transition ID returned by jira_getTransitions
• fields (object, optional): Additional fields required by the transition screen

10. jira_getIssueLinkTypes

Get the list of available issue link types (e.g., "Blocks", "Relates", "Duplicate") in the JIRA Data Center edition instance. Use this to discover valid link type names before calling jira_linkIssues.

Parameters: none

11. jira_linkIssues

Create a link between two JIRA issues in the JIRA Data Center edition instance.

Jira UI labels follow GET issuelinks, not the REST POST field names: if GET of an issue contains outwardIssue, that issue shows the outward phrase (blocks); if it contains inwardIssue, it shows the inward phrase (is blocked by). So inwardIssueKey is the issue that will display the outward phrase.

Parameters:

• inwardIssueKey (string, required): REST inward issue. In the Jira UI this issue shows the outward phrase (e.g. "blocks", "split to"). For PROJECT-123 to show "blocks PROJECT-456", pass inwardIssueKey=PROJECT-123.
• outwardIssueKey (string, required): REST outward issue. In the Jira UI this issue shows the inward phrase (e.g. "is blocked by", "split from"). Same example: outwardIssueKey=PROJECT-456.
• linkType (string, required): Name of the issue link type to apply (e.g., "Blocks", "Relates"). Use jira_getIssueLinkTypes to discover valid names for this JIRA installation.
• comment (string, optional): Comment added to the inward issue when the link is created, in JIRA Wiki Markup

12. jira_unlinkIssues

Delete an existing link between two JIRA issues in the JIRA Data Center edition instance.

Parameters:

• linkId (string, required): The id of the issue link to delete. Link ids are found in the issuelinks field of an issue (retrieve it via jira_getIssue with the issuelinks field).

13. jira_watchIssue

Add yourself (the authenticated user) as a watcher on a JIRA issue in the JIRA Data Center edition instance. Only the calling user can be added — there is no way to watch an issue on behalf of someone else.

Parameters:

• issueKey (string, required): The issue key (e.g., "PROJECT-123")

14. jira_unwatchIssue

Remove yourself (the authenticated user) as a watcher from a JIRA issue in the JIRA Data Center edition instance. Only the calling user can be removed — there is no way to unwatch an issue on behalf of someone else.

Parameters:

• issueKey (string, required): The issue key (e.g., "PROJECT-123")

15. jira_uploadAttachment

Upload a local file as an attachment to a JIRA issue. Only registered when filesystem uploads are enabled (see Attachment filesystem access).

Parameters:

• issueKey (string, required): The issue key (e.g., "PROJECT-123")
• sourcePath (string, required): Path to the file to upload, relative to a server-configured upload directory. Absolute paths and .. segments are rejected; symlinks and non-regular files are refused.
• filename (string, optional): Override for the attachment filename (defaults to the basename of sourcePath)

16. jira_downloadAttachment

Download attachment(s) from a JIRA issue, by issue key (optionally filtered by filename) or by a single attachment id. Returns the file content inline (base64 or text) — useful for inspecting a file or moving it elsewhere (e.g. re-uploading to a Confluence page). When filesystem downloads are enabled (see Attachment filesystem access), it can also save into the server-configured download directory.

Parameters:

• issueKey (string, optional): The issue key (e.g., "PROJECT-123") whose attachment(s) to download. Provide either issueKey or attachmentId.
• attachmentId (string, optional): Numeric id of a single attachment to download. Provide either attachmentId or issueKey.
• filename (string, optional): When using issueKey, download only attachments with this exact filename. If omitted, all attachments on the issue are downloaded.
• returnContent (none | base64 | text, optional): Whether to embed the file bytes in the response. Defaults to none.
• maxInlineBytes (number, optional): Maximum bytes to embed inline when returnContent is base64/text. Larger files are omitted from the inline content. Defaults to 1 MiB.
• save (boolean, optional): Save the attachment(s) into the server-configured download directory. Requires filesystem downloads to be enabled; existing files are never overwritten. (Only available when downloads are enabled.)
• saveName (string, optional): File name (no directories) to use when saving a single attachment; defaults to the attachment's own name. (Only available when downloads are enabled.)