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@holoscript/alphafold-plugin

v1.0.0

Published

AlphaFold protein structure prediction for HoloScript - Generate novel proteins in VR

Downloads

51

Vulnerabilities

Powered byPowered by Snyk
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  • 0Medium
  • 0Low

Links

Git

Maintainers

brianonbasedbrianonbased

Keywords

holoscriptpluginalphafoldprotein-predictionaimlvrarxrspatial-computingdrug-discoverybioinformatics

Readme

@holoscript/alphafold-plugin

AlphaFold protein structure prediction for HoloScript - Generate novel proteins in VR

npm version License: MIT

Features

  • 🧬 AlphaFold3 API Integration - Cloud-based protein structure prediction
  • 🔬 Local ColabFold Support - Run predictions on your own GPU
  • 🎨 pLDDT Confidence Coloring - Visualize prediction confidence in VR
  • 🧪 Multimer Prediction - Predict protein complexes (antibodies, etc.)
  • 📊 PAE Visualization - Predicted Aligned Error heatmaps
  • ⚡ Batch Predictions - Compare multiple protein variants

Installation

npm install holoscript @holoscript/alphafold-plugin
pip install requests  # Python dependency

Quick Start

object "My Protein" @alphafold_predict @structure_confidence {
  sequence: "MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVK",
  mode: "api",
  color_by: "confidence",
}

Documentation

See examples/protein-prediction.holo for comprehensive examples.

Requirements

  • Node.js: 18.0.0+
  • Python: 3.10+
  • AlphaFold3 API Key (for API mode) or ColabFold (for local mode)

License

MIT © HoloScript Contributors

Generated by: create-holoscript-plugin