@n8n-dev/n8n-nodes-monarchinitiative

Stop writing monarchinitiative API integrations by hand.

Every time you connect n8n to monarchinitiative, you waste hours mapping endpoints, defining parameters, and debugging schemas. You copy-paste from docs, fix edge cases, and pray nothing breaks.

What if connecting n8n to monarchinitiative took 5 minutes, not half a day?

This node gives you 26+ resources out of the box: Bioentity, Association, Cam, Bioentityset, Bioentityset Homologs, and 21 more: with full CRUD operations, typed parameters, and zero manual configuration.

What You Get

• Zero boilerplate: Resources, operations, and fields are pre-configured and ready to use
• Full CRUD: Create, read, update, and delete support where the API allows it
• Typed parameters: No more guessing field types
• Built-in auth: API key authentication, ready to go
• Declarative: Native n8n performance, no custom execute() overhead

Install

npm install @n8n-dev/n8n-nodes-monarchinitiative

Or in n8n:

1. Settings → Community Nodes → Install
2. Search: @n8n-dev/n8n-nodes-monarchinitiative
3. Click Install

Quick Start

1. Install the node (above)
2. Add credentials: monarchinitiative API → paste your API key
3. Drag the monarchinitiative node into your workflow
4. Pick a resource → pick an operation → done.

That's it. No configuration files. No code. It just works.

Resources

• Get Returns genes associated with a given anatomy
• Get Returns diseases associated with a case
• Get Returns genotypes associated with a case
• Get Returns models associated with a case
• Get Returns phenotypes associated with a case
• Get Returns variants associated with a case
• Get Returns cases associated with a disease
• Get Returns genes associated with a disease
• Get Returns genotypes associated with a disease
• Get Returns associations to models of the disease
• Get Returns pathways associated with a disease
• Get Returns phenotypes associated with disease
• Get Returns publications associated with a disease
• Get Returns substances associated with a disease
• Get Returns variants associated with a disease
• Get Returns annotations associated to a function term
• Get Returns genes associated to a GO term
• Get Returns publications associated to a GO term
• Get Returns taxons associated to a GO term
• Get Returns anatomical entities associated with a gene
• Get Returns cases associated with a gene
• Get Returns diseases associated with gene
• Get Returns expression events for a gene
• Get Returns function associations for a gene
• Get Returns genotypes associated with a gene
• Get Returns homologs for a gene
• Get Returns interactions for a gene
• Get Returns models associated with a gene
• Get Return diseases associated with orthologs of a gene
• Get Return phenotypes associated with orthologs for a gene
• Get Returns pathways associated with gene
• Get Returns phenotypes associated with gene
• Get Returns publications associated with a gene
• Get Returns variants associated with a gene
• Get Returns cases associated with a genotype
• Get Returns diseases associated with a genotype
• Get Returns genes associated with a genotype
• Get Returns genotypes genotype associations
• Get Returns models associated with a genotype
• Get Returns phenotypes associated with a genotype
• Get Returns publications associated with a genotype
• Get Returns genotypes variant associations
• Get Returns cases associated with a model
• Get Returns diseases associated with a model
• Get Returns genes associated with a model
• Get Returns genotypes associated with a model
• Get Returns phenotypes associated with a model
• Get Returns publications associated with a model
• Get Returns variants associated with a model
• Get Returns diseases associated with a pathway
• Get Returns genes associated with a pathway
• Get Returns phenotypes associated with a pathway
• Get Returns anatomical entities associated with a phenotype
• Get Returns cases associated with a phenotype
• Get Returns diseases associated with a phenotype
• Get Returns genes associated with a phenotype
• Get Returns genotypes associated with a phenotype
• Get Returns pathways associated with a phenotype
• Get Returns publications associated with a phenotype
• Get Returns variants associated with a phenotype
• Get Returns diseases associated with a publication
• Get Returns genes associated with a publication
• Get Returns genotypes associated with a publication
• Get Returns models associated with a publication
• Get Returns phenotypes associated with a publication
• Get Returns variants associated with a publication
• Get Returns associations between an activity and process and the specified substance
• Get Returns associations between given drug and roles
• Get Returns substances associated with a disease
• Get Returns cases associated with a variant
• Get Returns diseases associated with a variant
• Get Returns genes associated with a variant
• Get Returns genotypes associated with a variant
• Get Returns models associated with a variant
• Get Returns phenotypes associated with a variant
• Get Returns publications associated with a variant
• Get Returns basic info on object of any type
• Get Returns associations for an entity regardless of the type
• Get Return basic info on an object for a given type

• Get Returns associations connecting two entities
• Get Returns list of matching associations for a given subject category
• Get Returns list of matching associations between a given subject and object category
• Get Returns list of matching associations starting from a given subject source
• Get Returns list of matching associations pointing to a given object target
• Get Returns list of matching associations of a given type
• Get Returns the association with a given identifier

• Get Returns list of models
• Get Returns list of matches
• Get Returns list of all instances
• Get Returns list of ALL models
• Get Returns list of all contributors across all models
• Get Returns list of all properties used across all models
• Get Returns list property values for all models
• Get Returns list of models matching query
• Get Returns a complete model
• Get Returns list of models

• Get Returns compact associations for a given input set
• Get Summary statistics for objects associated
• Get TODO Graph object spanning all entities
• Get Summary statistics for objects associated

• Get Returns homology associations for a given input set of genes

• Get For a given gene s summarize its annotations over a defined set of slim
• Get For a given gene s summarize its annotations over a defined set of slim
• Get For a given gene s summarize its annotations over a defined set of slim

• Get Returns evidence graph object for a given association
• Get Returns evidence as a association results object given an association

• Get Returns list of matches

• Get Returns edges emanating from a given node
• Get Returns a graph node

• Get TODO maps a list of identifiers from a source to a target

• Get Returns list of prefixes
• Get Returns contracted URI
• Get Returns expanded URI

• Get Bulk download of case associations
• Get Bulk download of disease associations
• Get Bulk download of gene associations
• Get Bulk download of orthologs
• Get Bulk download of paralogs

• Get Annotate a given text using SciGraph annotator
• Post Annotate a given text using SciGraph annotator
• Get Annotate a given content using SciGraph annotator and get all entities from content
• Post Annotate a given content using SciGraph annotator and get all entities from content

• Get Returns information content IC for a set of relevant ontology classes
• Get Extract a subgraph from an ontology
• Post Extract a subgraph from an ontology

• Get Fetches a map from CURIEs IDs to labels

• Get Fetches a map from CURIEs IDs to labels
• Post Fetches a map from CURIEs IDs to labels

• Get Returns the ancestor ontology terms shared by two ontology terms
• Get Returns meta data of an ontology subset slim
• Get Returns meta data of an ontology term
• Get Returns graph of an ontology term
• Get Extract a subgraph from an ontology term
• Get Returns subsets slims associated to an ontology term

• Get Placeholder use OWLery for now
• Get Placeholder use direct SPARQL endpoint for now

• Get pairwise similarity

• Get Returns list of matches
• Get Returns list of matches

• Get All relations used plus count of associations
• Get All relations used plus count of associations
• Get Relation usage count for all subj x obj category combinations
• Get Relation usage count for all subj x obj category combinations showing label

• Get Returns list of matching concepts or entities using lexical search
• Get Returns list of matching concepts or entities using lexical search
• Get Returns list of matching concepts or entities using lexical search

• Get Returns list of variant sets
• Post Creates a new variant set
• Get Returns list of matches
• Get Returns list of variant sets from a specified time period
• Delete s variant set
• Get Returns a variant set
• Put Updates a variant set

• Get Compare a reference profile vs one profiles
• Post Compare a reference profile vs one or more profiles
• Get annotation score
• Post Get annotation score
• Get Search for phenotypically similar diseases or model genes

• Post Match a patient to diseases based on their phenotypes
• Post Match a patient to fruit fly genes based on similar phenotypes
• Post Match a patient to mouse genes based on similar phenotypes
• Post Match a patient to nematode genes based on similar phenotypes
• Post Match a patient to zebrafish genes based on similar phenotypes

• Get metadata for all datasets from SciGraph

Why This Node?

Without this node:

• Hours of manual API integration
• Copy-pasting from monarchinitiative docs
• Debugging auth, pagination, error handling
• Maintaining your own client code

With this node:

• Install → configure → use. 5 minutes.
• Auto-generated from the official monarchinitiative OpenAPI spec
• Always up to date when the API changes
• Native n8n performance

Auto-Generated

This node was auto-generated from the official monarchinitiative OpenAPI specification using @n8n-dev/n8n-openapi-node-ultimate, then validated against the live API so you get accurate types and real parameters, not guesswork.

When the monarchinitiative API updates, this node updates too.

License

MIT © kelvinzer0