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@phyloref/phyx

v1.1.1

Published

Classes and methods that help read and manipulate components of Phyloreference Exchange (PHYX) format files

Downloads

69

Vulnerabilities

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Links

Git

Maintainers

mrvaidyamrvaidyahlapphlapp

Keywords

phylogeneticsphylogenyphylogenetic definitionsclade definitions

Readme

phyx.js

Build Status DOI

The Phyloreference Exchange (PHYX) format is a JSON representation that can be used to store and transfer definitions of phyloreferences. This library provides classes to help interpret some parts of these files, and for transforming an entire Phyx file into a JSON-LD representation that can be reasoned over with an OWL 2 DL reasoner. See the Phyloreference Curation Tool or the Clade Ontology for examples of its usage.

Tutorials demonstrating the use of phyx.js are available.

Citation

phyx.js should be cited by citing our publication documenting the Phyx format and phyx.js.

Vaidya G, Cellinese N, Lapp H. 2022. A new phylogenetic data standard for computable clade definitions: the Phyloreference Exchange Format (Phyx) PeerJ 10:e12618 doi:10.7717/peerj.12618

Funding

Funded by the US National Science Foundation through collaborative grants DBI-1458484 and DBI-1458604. See Funding for details.