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@pipeworx/mcp-ncbi-eutils

v0.1.0

Published

NCBI E-utilities — federated Entrez search/fetch (PubMed/Gene/Nucleotide/…)

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Links

Git

Maintainers

mojibake-aimojibake-ai

Keywords

mcpmcp-servermodel-context-protocolpipeworxncbi-eutils

Readme

mcp-ncbi-eutils

NCBI E-utilities — federated Entrez search/fetch (PubMed/Gene/Nucleotide/…)

Part of Pipeworx — an MCP gateway connecting AI agents to 250+ live data sources.

Tools

| Tool | Description | |------|-------------| | einfo | Database info / field list. | | esearch | Search a database → uid list. | | esummary | Summary records by uid. | | efetch | Full records. Returns text (XML/GenBank/FASTA/…) per rettype. | | elink | Links across databases. | | egquery | Global query across all Entrez databases. |

Quick Start

Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):

{
  "mcpServers": {
    "ncbi-eutils": {
      "url": "https://gateway.pipeworx.io/ncbi-eutils/mcp"
    }
  }
}

Or connect to the full Pipeworx gateway for access to all 250+ data sources:

{
  "mcpServers": {
    "pipeworx": {
      "url": "https://gateway.pipeworx.io/mcp"
    }
  }
}

Using with ask_pipeworx

Instead of calling tools directly, you can ask questions in plain English:

ask_pipeworx({ question: "your question about Ncbi Eutils data" })

The gateway picks the right tool and fills the arguments automatically.

More

License

MIT