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@pipeworx/mcp-string-db

v0.1.0

Published

STRING protein-protein interaction networks across ~12k organisms

Vulnerabilities

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Links

Git

Maintainers

mojibake-aimojibake-ai

Keywords

mcpmcp-servermodel-context-protocolpipeworxstring-db

Readme

mcp-string-db

STRING protein-protein interaction networks across ~12k organisms

Part of Pipeworx — an MCP gateway connecting AI agents to 250+ live data sources.

Tools

| Tool | Description | |------|-------------| | resolve | Map free-text identifiers (gene symbols, accessions) → STRING identifiers. | | interactions | Interaction partners for a set of proteins. | | network | Network image url + tabular interaction data. | | enrichment | Functional enrichment (GO, KEGG, Pfam, Reactome, …) for a gene set. | | homology | Homology mappings. |

Quick Start

Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):

{
  "mcpServers": {
    "string-db": {
      "url": "https://gateway.pipeworx.io/string-db/mcp"
    }
  }
}

Or connect to the full Pipeworx gateway for access to all 250+ data sources:

{
  "mcpServers": {
    "pipeworx": {
      "url": "https://gateway.pipeworx.io/mcp"
    }
  }
}

Using with ask_pipeworx

Instead of calling tools directly, you can ask questions in plain English:

ask_pipeworx({ question: "your question about String Db data" })

The gateway picks the right tool and fills the arguments automatically.

More

License

MIT