RepSeqIO Software Package

This package provides RepSeqIO binaries for the Platforma Backend system.

Reference

https://github.com/milaboratory/repseqio

Installation

npm install @platforma-open/babraham.software-repseqio

Usage

The package provides RepSeqIO binaries for various platforms. The binaries are automatically selected based on the host system.

Version Upgrade Instructions

To upgrade to a new version of RepSeqIO:

1. Download the new RepSeqIO version:

   • Go to https://github.com/milaboratory/repseqio/releases
   • Download the latest version's zip file (e.g., repseqio-1.1.zip)

2. Prepare the binaries:

   • Create the dld directory if it doesn't exist:

     mkdir -p dld

   • Extract the downloaded archive to the dld directory:

     unzip repseqio-1.1.zip -d dld/

   • Rename the extracted directory to match the expected structure:

     mv dld/repseqio-1.1 dld/repseqio

3. Update package.json:

   • Update the version in block-software.entrypoints.main.binary.artifact.version to the new version (e.g., "1.1")
   • Bump the package version in the root version field if needed

4. Build and publish:

   npm run pkg:build
   npm run pkg:publish

Note: RepSeqIO is a Java application, so the package includes the Java runtime environment. The build process will handle the necessary Java configuration automatically.

Supported Platforms

• Linux (x64, aarch64)
• macOS (x64, aarch64)
• Windows (x64)

License

UNLICENSED