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@platforma-open/milaboratories.runenv-python-3.12.10-pgen

v0.3.0

Published

Python 3.12.10 run environment for the Generation Probability block (olga for CDR3 generation probability + numpy + polars with the rtcompat runtime)

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Links

Maintainers

mike-ainselmike-ainseldbolotin_midbolotin_mi

Keywords

Readme

Python 3.12.10 run environment for the Generation Probability block (generation-probability): olga (V(D)J generation-probability computation for CDR3s, including its 10 bundled recombination models) plus numpy and polars for Parquet I/O.

The set is pinned flat and matches the block's requirements.txt: olga, numba, llvmlite, numpy, polars, polars-runtime-32 and polars-runtime-compat. The block installs it with pip --no-index --find-links <runenv packages>, so each pin in the block must exist here as a wheel. Change the pins here and in the block together.

polars-runtime-compat is the polars[rtcompat] extra. It replaces polars-lts-cpu. olga and numba are declared under noDeps. Their loose requirements otherwise pull the newest numba, llvmlite and numpy next to the pinned versions.

The block uses olga's FastPgen, which runs numba kernels. numpy 2.4.6 has only manylinux_2_28 wheels on Linux, so the host needs glibc 2.28 or newer. macOS-Intel (macosx-x64) is intentionally not built — llvmlite ships no cp312 wheel for that platform.