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@qim3d/volume-explorer

v1.2.1

Published

QIM Center volume explorer based on vol-e core.

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Links

Maintainers

delestrodelestroalesacalesac

Keywords

Readme

QIM Volume Explorer

The QIM Volume Explorer is a data exploration tool for 3D image analysis developed by the QIM Center.

It is implemented on top of the vole-core library, made by the Allen Institute for Cell Science.

Installation

Install globally to get the volume-explorer command on your PATH:

npm install -g @qim3d/volume-explorer

volume-explorer

You can also run it without a global install:

npx @qim3d/volume-explorer

To open a dataset directly:

volume-explorer https://platform.qim.dk/qim-public/escargot/escargot.zarr

or

volume-explorer --src https://platform.qim.dk/qim-public/escargot/escargot.zarr

The published package now ships a production Vite build, including the worker and shader bundles used for volumetric rendering.

Development

git clone [email protected]:qim-center/vole-core.git

npm install

npm run dev

For a production-style local run that uses the packaged CLI and built assets:

npm start

Features

  • Volumetric data exploration
  • Load OME-Zarr, OME-Tiff files from URL
  • Intensity histogram, opacity
  • Colour pickers
  • Area of interest cropping
  • OME-Zarr scale level selection

Landing High def

Advanced

There are two hidden menus for advanced users, accessible by pressing Ctrl + Alt + 1 and Ctrl + Alt + 2.

Advanced menus Advanced menus