@sciskillhub/cli

One-command install for AI agent skills - Install skills to Claude, Cursor, Codex, and 7+ more agents instantly

Quick Example: Single Cell Analysis

# 1. Browse Life Science skills
npx @sciskillhub/cli list skill --subject life-science

# 2. Filter by tag
npx @sciskillhub/cli list skill --subject life-science --tag "single cell"

# 3. Install AnnData to Claude (use short name!)
npx @sciskillhub/cli install anndata --platform claude -y

# 4. Now Claude can help you analyze .h5ad files!

Installation

Option 1: Using npx (Recommended) ⭐

npx @sciskillhub/cli install <skill-slug> --platform claude

Pros: No installation, always latest version, works immediately

Option 2: Global Installation

npm install -g @sciskillhub/cli

# Use shorter command
sciskillhub install <skill-slug> --platform claude

Pros: Faster, works offline, shorter command

Usage Guide

Example: Complete Single Cell Workflow

# Step 1: Browse Life Science category
npx @sciskillhub/cli list skill --subject life-science --limit 20

# Step 2: Filter by tags
npx @sciskillhub/cli list skill --subject life-science --tag "single cell"

# Step 3: Search by keywords
npx @sciskillhub/cli list skill --subject life-science --query "embedding"

# Step 4: Install core tools (use short names!)
npx @sciskillhub/cli install anndata --platform claude -y
npx @sciskillhub/cli install scanpy --platform claude -y
npx @sciskillhub/cli install scvi-tools --platform claude -y

# Step 5: Use the skills in Claude
# Prompt: "Help me analyze this h5ad file with scanpy"
# Prompt: "Perform batch correction on my single-cell data using scvi-tools"

Popular Single Cell Skills

| Skill | Description | Slug | |-------|-------------|------| | anndata | Data structure for .h5ad files, scverse ecosystem | anndata | | scanpy | scRNA-seq pipeline: QC, clustering, markers | scanpy | | scvi-tools | Deep learning: batch correction, integration | scvi-tools | | cellxgene-census | Query 61M+ cells from CELLxGENE | cellxgene-census | | scvelo | RNA velocity for trajectory inference | scvelo | | arboreto | Gene regulatory networks (GRNBoost2) | arboreto |

All Commands

Discovery & Browse

| Command | Description | |---------|-------------| | list subject | List all subjects (学科) | | list skill --subject <name> | Browse skills by subject | | list skill --tag <tag> | Filter by tag | | list skill --query <text> | Search by keywords | | list tag --subject <name> | Show tags in a subject |

Install

| Command | Description | |---------|-------------| | install <skill> --platform <name> | Install skill to AI agent |

Smart Search: Use short names like anndata, scanpy, scvi-tools. If multiple skills match, you'll be prompted to choose.

Supported Platforms: claude, cursor, codex, gemini, copilot, windsurf, cline, roo, opencode, openclaw, junie, kiro, augment, warp, goose

Management

| Command | Description | |---------|-------------| | login | Log in to SciSkillHub | | init | Create a new skill project | | push | Push local files to remote | | publish | Publish skill to public | | status | Check local vs remote status | | list | List your skills |

Examples

Discovery Examples

# Browse Life Science skills
npx @sciskillhub/cli list skill --subject life-science

# Filter by single cell tag
npx @sciskillhub/cli list skill --subject life-science --tag "single cell"

# Search for embedding tools
npx @sciskillhub/cli list skill --subject life-science --query "embedding"

# List popular tags
npx @sciskillhub/cli list tag --subject life-science --limit 10

Install Examples

# Install to Claude (personal)
npx @sciskillhub/cli install <skill-slug> --platform claude -y

# Install to Cursor (project-specific)
npx @sciskillhub/cli install <skill-slug> --platform cursor --project

# Install with custom directory
npx @sciskillhub/cli install <skill-slug> --platform claude -d /path/to/skills

Why SciSkillHub CLI?

• One Command, Any Agent - Install to 10+ AI platforms with the same command
• Smart Filtering - Browse by subject (学科) and tag (标签)
• Science-Focused - Curated tools for Life Science, Chemistry, Physics
• Works Offline - Install once, use anywhere
• Open Source - MIT license, community driven

Configuration

Config stored in ~/.skillhub/:

• config.json - API URL, default settings
• auth.json - Secure authentication tokens

Development

# Clone
git clone https://github.com/sciskillhub/typescript-cli.git
cd typescript-cli

# Install
npm install

# Build
npm run build

# Test
npm run typecheck

Links

• Website: https://sciskillhub.org
• npm: https://www.npmjs.com/package/@sciskillhub/cli
• GitHub: https://github.com/sciskillhub/typescript-cli

License

MIT © SciSkillHub