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@sjcrh/proteinpaint-r

v2.178.0

Published

R-based utilities for proteinpaint

Vulnerabilities

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Links

Git

Maintainers

siosonelsiosonelaacicaacicppteamuserppteamuser

Keywords

Readme

Installation

Docker

This is already included in the deps image and other images that use it as a base image.

Mac

Go to the Downloads directory

cd ~/Downloads

Download the R .pkg file, where VERSION is the same version of R specified in Dockerfile (see proteinpaint/container/deps/Dockerfile)

arm64-based (Apple silicon):

curl -O https://cran.r-project.org/bin/macosx/big-sur-arm64/base/R-{VERSION}-arm64.pkg

Intel-based:

curl -O https://cran.r-project.org/bin/macosx/big-sur-x86_64/base/R-{VERSION}-x86_64.pkg

Open the .pkg file and follow the installation instructions.

Verify that the correct version of R was installed

R --version

R dependencies

Install R dependencies

Rscript ~/dev/sjpp/proteinpaint/R/utils/install.pkgs.R

Add new R dependencies

Add CRAN packages to utils/cran.pkgs.txt

Add Bioconductor packages to utils/bioconductor.pkgs.txt

Then re-build the deps image, as described here: https://github.com/stjude/proteinpaint/wiki/Buiding-a-deps-image