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@sjcrh/proteinpaint-server

v2.177.0

Published

a genomics visualization tool for exploring a cohort's genotype and phenotype data

Readme

ProteinPaint Server

The data server backend for the ProteinPaint application

Installation

The client dependencies should be installed as a workspace, follow the README at the project root.

You can either use a docker container for development (../build/dev/README.md), or build from source. See https://github.com/stjude/proteinpaint/wiki.

Serverconfig

server/serverconfig.json is used:

  • when running any server or test scripts from the pp/server directory
  • if ${process.cwd()/serverconfig.json does not exist wherever @sjcrh/proteinpaint-server is called (if can give example of this usecase)

If no test:unit code uses serverconfig, then it would have been okay to not have server/serverconfig.json. However, it's safer to simply have that file available just in case any imported server code uses serverconfig and runs as part of test:unit, and that's why server/emitImports.js creates one if it doesn't exist by copying container/ci/serverconfig.json.

Develop

The local development environment is usually triggered following one of these:

Test

To run both type checks and test:unit: npm run test.

To run type check only: npx tsc.

To run unit tests only: npm run test:unit

To run specific test file: npx tsx path/to/spec.ts

Build

npm pack

Release

Use Github Actions to coordinate the release of related package updates. The package versioning, build, and deployment uses the standard npm tooling under the hood (version, pack, and publish, respectively).