Claude Skills

A collection of reusable Claude skills for neuroimaging research workflows and scientific writing.

Available Skills

| Skill | Install | Description | |-------|---------|-------------| | dicom2fmriprep | npx @yibeichan/claude-skills install dicom2fmriprep | Full DICOM→BIDS→fMRIPrep pipeline: heudiconv heuristics, BIDS validation fixes, fMRIPrep on SLURM via BABS. | | fmri-ssm | npx @yibeichan/claude-skills install fmri-ssm | State-space models for fMRI: HMM, SLDS, rSLDS, SNLDS for resting-state, task, and naturalistic designs. | | bids-format | npx @yibeichan/claude-skills install bids-format | BIDS standard for all data types — naming conventions, dataset creation, multi-modal conversion (heudiconv, MNE-BIDS, pypet2bids), validation, derivatives, project organization, DataLad, sharing. | | neuroimaging-qc | npx @yibeichan/claude-skills install neuroimaging-qc | Evidence-based QC decisions for fMRI, EEG, fNIRS using metrics from fMRIPrep, MRIQC, FreeSurfer. | | bidsapp-nidm-standards | npx @yibeichan/claude-skills install bidsapp-nidm-standards | Standards for creating NIDM-integrated BIDSapps that run through BABS. | | scientific-writer | npx @yibeichan/claude-skills install scientific-writer | Rigorous scientific manuscripts following IMRAD, CONSORT/STROBE/PRISMA guidelines. |

Installation

Skills are installed to .claude/skills/ in your current working directory by default.

Quick Install (Recommended)

Install a specific skill using npx:

npx @yibeichan/claude-skills install bidsapp-nidm-standards

Install all skills:

npx @yibeichan/claude-skills install-all

List available skills:

npx @yibeichan/claude-skills list

Custom Target Directory

Install to a custom directory:

npx @yibeichan/claude-skills install bidsapp-nidm-standards --target ./my-skills

Overwrite Existing Skills

If a skill already exists, use --overwrite to replace it:

npx @yibeichan/claude-skills install bidsapp-nidm-standards --overwrite

Python Script (Alternative)

If you don't have npm/node installed, use the Python script:

# List skills
python install.py --list

# Install a skill
python install.py bidsapp-nidm-standards

# Install all skills
python install.py --all

# Custom target
python install.py scientific-writer --target ./skills

Uninstall Skills

Remove installed skills:

# Uninstall a specific skill
npx @yibeichan/claude-skills uninstall neuroimaging-qc

# Uninstall all skills
npx @yibeichan/claude-skills uninstall-all

Or with Python:

python install.py --uninstall neuroimaging-qc
python install.py --uninstall-all

Development

See CLAUDE.md for development guidelines or MAINTAINERS.md for adding/updating skills.

License

MIT