bioinformatics-js

This package is currently just a dream. Reach out to me if you're interesting in open source bioinformatics.

www.linkedin.com/in/nateazevedo

Installation

npm install bioinformatics-js

Usage

import { DNASequenceViewer } from 'bioinformatics-js';

function App() {
  return (
    <DNASequenceViewer
      sequence="ATCGATCGATCG"
      annotations={[]}
    />
  );
}

Features

• DNA sequence visualization
• Annotation management
• Interactive genomics tools
• Built with React and D3.js

Local Testing

To test this package locally:

Method 1: Using npm pack (Recommended)

1. Build and package:

npm run build
npm run test:local

2. In your test project:

npm install ../DNA\ Sequence\ Viewer/bioinformatics-js-*.tgz

Method 2: Using file protocol

1. Build the package:

npm run build

2. In your test project:

npm install file:../DNA\ Sequence\ Viewer

3. Rebuild and reinstall after changes:

# In package directory
npm run build
# In test project
npm install file:../DNA\ Sequence\ Viewer --force

Automated Publishing

This package automatically publishes to NPM on commits to master.

Setup:

1. Get your NPM token: npm token create
2. Add it to GitHub Secrets as NPM_TOKEN
3. Commits to master will trigger automatic builds and publishing

Manual version bump:

npm version patch  # or minor, major
git push origin master --tags

License

MIT