sciskillhub

Discover and install AI agent skills for science — Install skills to Claude, Cursor, Codex, and 40+ more agents instantly

Package: sciskillhub · Command: sciskill

Quick Example

# 1. Browse skills by taxonomy
sciskill tax                                            # View object / stage / domain options
sciskill tax --tasks --object "Methods and Techniques" --stage "Data Analysis and Modeling" --domain "Life Sciences"
sciskill browse skills --domain "Life Sciences" --task "Quality Control" "Clustering"

# 2. Install a skill
sciskill install scanpy --agent claude-code -y

# 3. Now your agent can use it!

Installation

Option 1: Using npx (Recommended)

npx sciskillhub install <skill> --agent claude-code

No installation needed, always latest version.

Option 2: Global Install

npm install -g sciskillhub
sciskill install <skill> --agent claude-code

Recommended Workflow

SciSkillHub uses a 4-level taxonomy (object → stage → domain → task) to organize skills. Follow this order to narrow down results:

1. Judge 2-3 possible objects (e.g. Methods and Techniques + Software and Tools)
2. Judge 1-2 possible stages (e.g. Data Analysis and Modeling)
3. Judge domains (e.g. Life Sciences)
4. Query tasks for each object+stage combination
5. Query skills with selected tasks
6. Install the best match

Try multiple object combinations — many tasks span multiple dimensions. For example, "nanopore data analysis" involves both Methods and Techniques and Software and Tools.

Commands

Discover & Install

| Command | Description | |---------|-------------| | sciskill tax | View taxonomy values (object, stage, domain) | | sciskill tax --tasks --object X --stage Y --domain Z | Query tasks by filters | | sciskill tax --task-list | View all task values | | sciskill browse skills [options] | Browse & filter skills by taxonomy | | sciskill search <query> | Search skills by keywords (s, find) | | sciskill recommend | Get personalized recommendations (rec) | | sciskill install <skill> --agent <name> | Install skill to agent (i, add) |

Local Management

| Command | Description | |---------|-------------| | sciskill list | List locally installed skills (ls) | | sciskill remove <skill> | Remove an installed skill (rm, uninstall) | | sciskill inspect | Inspect skill in current directory | | sciskill init | Initialize a new skill project |

Account

| Command | Description | |---------|-------------| | sciskill login | Log in to SciSkillHub | | sciskill logout | Log out | | sciskill whoami | Show current user |

Browse Skills Options

sciskill browse skills \
  --object "Methods and Techniques" \
  --stage "Data Analysis and Modeling" \
  --task "Quality Control" "Alignment" \
  --domain "Life Sciences" \
  --sort name \
  --limit 20

| Option | Description | |--------|-------------| | --object <values...> | Filter by object | | --stage <values...> | Filter by stage | | --task <values...> | Filter by tasks | | --domain <values...> | Filter by domains | | -q, --query <text> | Additional keyword filter | | --sort <field> | Sort by: name, stars, recent, score | | --order <dir> | Sort order: asc, desc | | -l, --limit <n> | Number of results (default: 20) | | --json | JSON output |

Supported Agents (45)

| --agent | Agent | Global Path | |-----------|-------|-------------| | claude-code | Claude Code | ~/.claude/skills/ | | cursor | Cursor | ~/.cursor/skills/ | | codex | Codex | ~/.codex/skills/ | | gemini-cli | Gemini CLI | ~/.gemini/skills/ | | github-copilot | GitHub Copilot | ~/.copilot/skills/ | | windsurf | Windsurf | ~/.codeium/windsurf/skills/ | | cline | Cline | ~/.agents/skills/ | | warp | Warp | ~/.agents/skills/ | | roo | Roo Code | ~/.roo/skills/ | | augment | Augment | ~/.augment/skills/ | | junie | Junie | ~/.junie/skills/ | | opencode | OpenCode | ~/.config/opencode/skills/ | | openclaw | OpenClaw | ~/.openclaw/skills/ | | goose | Goose | ~/.config/goose/skills/ | | amp | Amp | ~/.config/agents/skills/ | | kimi-cli | Kimi Code CLI | ~/.config/agents/skills/ | | replit | Replit | ~/.config/agents/skills/ | | antigravity | Antigravity | ~/.gemini/antigravity/skills/ | | bob | IBM Bob | ~/.bob/skills/ | | codebuddy | CodeBuddy | ~/.codebuddy/skills/ | | continue | Continue | ~/.continue/skills/ | | cortex | Cortex Code | ~/.snowflake/cortex/skills/ | | crush | Crush | ~/.config/crush/skills/ | | deepagents | Deep Agents | ~/.deepagents/agent/skills/ | | droid | Droid | ~/.factory/skills/ | | firebender | Firebender | ~/.firebender/skills/ | | iflow-cli | iFlow CLI | ~/.iflow/skills/ | | kilo | Kilo Code | ~/.kilocode/skills/ | | kiro-cli | Kiro CLI | ~/.kiro/skills/ | | kode | Kode | ~/.kode/skills/ | | mcpjam | MCPJam | ~/.mcpjam/skills/ | | mistral-vibe | Mistral Vibe | ~/.vibe/skills/ | | mux | Mux | ~/.mux/skills/ | | openhands | OpenHands | ~/.openhands/skills/ | | pi | Pi | ~/.pi/agent/skills/ | | qoder | Qoder | ~/.qoder/skills/ | | qwen-code | Qwen Code | ~/.qwen/skills/ | | trae | Trae | ~/.trae/skills/ | | trae-cn | Trae CN | ~/.trae-cn/skills/ | | zencoder | Zencoder | ~/.zencoder/skills/ | | neovate | Neovate | ~/.neovate/skills/ | | pochi | Pochi | ~/.pochi/skills/ | | adal | AdaL | ~/.adal/skills/ | | universal | Universal | ~/.config/agents/skills/ | | command-code | Command Code | ~/.commandcode/skills/ |

Backward-compatible aliases: claude → claude-code, gemini → gemini-cli, copilot → github-copilot, kiro → kiro-cli

Development

git clone https://github.com/sciskillhub/typescript-cli.git
cd typescript-cli
npm install
npm run build
npm link   # makes 'sciskill' available globally

Links

• Website: https://sciskillhub.org
• npm: https://www.npmjs.com/package/sciskillhub
• GitHub: https://github.com/sciskillhub/typescript-cli

License

MIT