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ts-rna-draw

v0.1.0

Published

Experimental RNA structure drawing in typescript

Vulnerabilities

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Links

Maintainers

vedtopkarvedtopkar

Keywords

Readme

TS RNA Draw

Ved's attempt at using Typescript to write a pure Javascript RNA secondary structure drawing app. Play around with it here: https://vedtopkar.github.io/ts-rna-draw/

Demo

ts-rna-draw-demo

Example

Using the following inputs:

AAAAAGGGGGAAGGGGAAACCCAAGGGGAAACCCACCCCCAAAAAAAAAAGGGGGGAAAAAAACCACCCAAAAA
.....(((((..(((....)))..(((....))).)))))..........(((((........)).))).....

We get: ts-rna-draw-example

Usage

Clone:

git clone https://github.com/vedtopkar/ts-rna-draw.git

Install npm module dependencies:

cd ts-rna-draw && yarn install

For development, start the parcel server with yarn:

yarn watch

Your page will reload every time you hit save on a modified .ts or .html file.

Dependencies

Feature TODOs

  • Implement pan mouse functionality
  • Figure out robust vertical text centering for nucleotides
  • Implement interactive flipping stems around basline
  • ~~Scale up terminal loop radius for large-sequence loops~~
  • ~~Abstract away global variables for drawing config~~
  • ~~Split up drawing scripts for each element type~~
  • ~~Update stem drawing for arbitrary angles~~
  • ~~Implement drawing bulges~~
  • ~~Implement drawing internal loops~~
  • ~~Implement drawing multi-loops~~
  • ~~Implement zoom mouse functionality~~
  • ~~Implement interactive stem moving at bulges~~
  • ~~Implement interactive stem moving at internal loops~~
  • ~~Implement interactive stem moving at multi-loops~~